plotly_embed.RdThis function will
plotly_embed(source = "https://pbs.twimg.com/media/Bk-if_XCIAASAQI.jpg", xref = "paper", yref = "paper", x = 0.5, y = 0.5, sizex = 1, sizey = 1, opacity = 1, sizing = "contain", xanchor = "center", yanchor = "middle")
| data | A square, numeric dataframe, matrix or tibble. |
|---|---|
| max_iter | A positive integer for the number of iterations. See details. |
| perplexity | A positive integer that loosely equates to the number of nearest neighboors. See details. |
| theta | A positive numeric value between 0-1 that toggles between exact t-SNE and Barnes-Hut t-SNE. See details. |
| suffix | A string to be used as the suffix for the output distance name. |
| file | NULL or the absolute path to save the results as an RData file. |
| cores | An integer value equal to 1 or greater for the number of computer cores to use. |
| verbose | TRUE or FALSE. Should the function tell you what is happening internally? |
A list of t-SNE results, which can be viewed with trellis_tsne.
Muchmore, B., Muchmore P. and Alarcón-Riquelme ME. (2018). Optimal Distance Matrix Construction with PreciseDist and PreciseGraph.
library(PreciseDist) test_matrix <- replicate(10, rnorm(100)) test_dists <- test_matrix %>% precise_dist(c("manhattan", "euclidean"))#> [1] "Starting dists calculations at 2018-11-29 15:20:08" #> [1] "Finished dists calculations at 2018-11-29 15:20:09" #> [1] "Calculations took: 0.89 seconds" #> [1] "Starting dist_funcs calculations at 2018-11-29 15:20:09" #> [1] "Finished dist_funcs calculations at 2018-11-29 15:20:09" #> [1] "Calculations took: 0 seconds"test_tsne <- test_dists %>% precise_tsne(data, file = NULL, max_iter = 1001, perplexity = 15, theta = 0.0, cores = 1, suffix = "", verbose = TRUE)#> Error in precise_tsne(., data, file = NULL, max_iter = 1001, perplexity = 15, theta = 0, cores = 1, suffix = "", verbose = TRUE): unused arguments (file = NULL, cores = 1, suffix = "")